Mark & Jesse give NOAA Webinar on Urban estuary eDNA

On 19 November Mark Stoeckle and Jesse Ausubel presented the NOAA ‘Omics Webinar on “Urban estuary eDNA reports seasonal abundance of marine fish, and, thanks to wastewater, tracks local wildlife, land birds, household pets, and human diet.” A video of the Webinar, one hour including Q&A, is here in YouTube. Thanks to Katie Poser and Nicole Miller for hosting and organizing.

Abstract: Here we analyzed vertebrate eDNA in New York City’s East River, a rocky estuary channel difficult to survey with mechanical gear and subject to wastewater discharge. There was a 10-fold increase in local marine fish eDNA in summer and seasonal differences among taxa consistent with known phenology. Levels of other vertebrate eDNA—domesticated animal, non-fish wildlife, and dietary fish—were correlated with human eDNA levels, consistent with a shared wastewater source. Wastewater eDNA identified the commonest urban mammals, land birds, and household pets. Proportions of dietary animal eDNA in wastewater closely approximated proportions in national consumption statistics, opening a window into human diet assessment. Wastewater eDNA analysis added value in an urban estuary survey of marine fish eDNA.

On Trump’s Higher Ed Compact

Jesse Ausubel and Bill Massy, who teamed to create the first (and only) video game of the American university, Virtual U., reunited to publish an Op-Ed in RealClear Education on A Video Game of the Trump Higher Ed Compact, Seriously. Maybe university leaders can learn something from builders and players of World of Warcraft and Fortnite.  It’s time for a new generation of simulations in the spirit of Virtual U.

Jesse on Decouple podcast

Canadian Chris Keefer, an emergency medical physician and president of Canadians for Nuclear Energy, hosts Jesse Ausubel for an hour on his Decouple podcast. Jesse discusses his intellectual roots, the environmental trifecta of land-sparing, decarbonization, and dematerialization, and contrasting Catholic and Protestant views of strategy and fate in relation to energy systems.

“Cosmic View of Life” paper and video released

PHE guest investigator David Thaler is a co-author of A Cosmic View of Life on Earth: Hierarchical Visualization of Biological Data Using Astronomical Software. The cooperative international project “A Cosmic View of Life on Earth” adapts an immersive astrophysics visualization platform called OpenSpace to contextualize diverse biological data. Dimensionality reduction techniques harmonize biological information to create spatial representations in which data are interactively explored on flat screens and planetarium domes. Visualizations are enriched with geographic metadata, three-dimensional scans of specimens, and species-specific sonifications (e.g., bird songs). The “Cosmic View” project eases the dissemination of stories related to biological domains (e.g., insects, birds, mammals, human migrations) and facilitates scientific discovery. A terrific 4-minute supplementary video supports the article.

Leonardo Da Vinci DNA project publications

Leo DNA project counsel Eric Rayman’s essay “Can an Artist’s DNA Help Detect Forgeries?” has been published in the lively art world publication HYPOALLERGIC.

The key methods paper by Rhonda Roby et al., Sampling techniques and genomic analysis of biological material from artworks, appeared in the Journal of Forensic Sciences.

The paper by Massimo Guerrero et al, “Scaling Turbulent Wake Flow Downstream of Isolated Piers in Laboratory and River” where they explore using Leonardo’s drawings to estimate his visual acuity appeared in Results in Engineering.

As reported in a post on 26 May, in their new book “Genìa Da Vinci. Genealogy and Genetics for Leonardo’s DNA,” published by Angelo Pontecorboli Editore, Alessandro Vezzosi and Agnese Sabato present findings from 30 years of genealogical research that have culminated in groundbreaking insights. The book documents an elaborate family tree tracing back to 1331, spanning 21 generations and involving over 400 individuals. The work lays the groundwork for reconstruction of Leonardo’s genetic profile.

AI & Energy foreseen in 2019

In 2019 the CEO of the electric company AEP asked Jesse to address his leadership. Jesse’s talk on Climate and Power included the following prescient words:

A more fascinating and important question is how IT and AI will alter demand.  Siri and Alexa are hungry goddesses.  I mentioned illuminated skylines of cities but consider that a square foot of a data center guzzles more than 100 times the electricity of a square foot of a skyscraper.  More than 1500 skyscrapers of more than 40 stories now define the world’s cities, but the population of enterprise-class date centers now exceeds 5000.  The Switch Corporation’s Citadel data center in Northern Nevada will be 7.2 m square feet, 0.25 square miles, and more than twice the area of the world’s largest office building, the Burj al Khalifa in Dubai.  It will consume 650 MW around the clock.  In round numbers, one million square feet of a new data center demand about 100 MW to live, a density of about 1000 watts per square meter.  The world’s most powerful computer, the Summit Supercomputer in Oak Ridge, demands per square foot about 20 times a conventional data center.  While efficiency gains continuously, the cloud is nevertheless a glowing cloud of electrons.

Connecting the clouds and all the devices that rely on the clouds also uses a lot of electricity.  Per unit of data transported, wireless systems use about ten times the juice of a wired system.  Each smart phone finally uses about the same electricity as a high-efficiency household refrigerator.  The global population of smart phones may pass five billion in 2019.  Meanwhile, Amazon has already sold an additional 100 million digital assistants such as Alexa.  We are creating a world with hundreds or thousands of radios per person.  The system now operates at 4G, which involves about 20 base stations per square km, globally about four million cell towers.  Present information networking uses about 200-300 TW hours per year, about $20 billion worth. 

5G, one hundred times faster and needed for high resolution streaming, virtual reality, and autonomous devices, may employ as many as 2000 base stations per sq km, and the Global Small Cell Forum of the telecom industry anticipates for 2025 some 70 million base stations and networking demand for $90 bn worth of electricity.   All this will come before autonomous vehicles and indeed is the prerequisite for the sensors and AI that will make autonomy safe and effective.

Whether or not the autonomous vehicles (AVs) use batteries or hydrogen for propulsion, they will use electricity to process their zettabytes and yottabytes of data.  In effect each AV will be a high-level server.  A fully connected car is expected to generate 25 GB of data per hour.  If the car is used 2 hours each day, 60 such cars would generate a petabyte in a year, 60,000 cars an exabyte, and 60,000,000 cars a zettabyte.  The present global annual market for servers is about 10 million units.  Motor vehicle sales globally are an order of magnitude larger, about 100 million.  No wonder software and hardware companies now read Car and Driver.  Powering a global stock of one billion servers that also happen to be autos will be a good business, even apart from propulsion.  IT can drive a new wave of global electrification, including for mobility.  Keep an eye on energy use patterns in Northern Virginia, which hosts the world’s largest concentration of large data centers.

Times of London on Leonardo DNA Project

The new book on the Genealogy and Genetics of Leonardo Da Vinci by Alessandro Vezzosi and Agnese Sabato causes a blaze of interest in the Leonardo Da Vinci DNA Project (which Jesse co-founded and chairs) including this article in the Times of London. Congratulations to the authors, and the entire network, including Terry Collins. Jesse sent a statement but could not attend in person the public event in Florence. Thanks to Vinci mayor Daniele Vanni and Tuscany governor Eugenio Giani.