The Barcode Blog

A mostly scientific blog about short DNA sequences for species identification and discovery. I encourage your commentary. -- Mark Stoeckle

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DNA barcoding helps resolve tropical biodiversity

Tropical fauna challenge taxonomy because species richness is greater in the tropical than in temperate zones, most tropical species are as yet undescribed, and within-species genetic variation appears to be greater.

World Terrestrial Biodiversity https://www.nhm.ac.uk/research-curation/projects/worldmap/
Land Animal and Plant Biodiversity World Map

Two recent papers show DNA barcoding aids species identification and discovery in tropical fauna. In January 24, 2006 Proceedings of the National Academy of Sciences USA, Hajibabaei et al examine 4260 specimens representing 521 (71%) of hesperiids (skipper butterflies), sphingids (sphinx moths), and saturniid moths of the of the ACG conservation area in Costa Rica. 510 (98%) of recognized species have distinct barcodes, 11 (2%) have barcodes that overlap with another closely-related species, and 13 recognized species have 2 or more distinct barcode clusters. Associated co-variation in habitat, food plant, and adult and caterpillar morphology indicate these clusters represent cryptic species, a total of 27 new species whose discovery was facilitated by barcoding.

In a similar vein, DNA barcoding revealed cryptic species with unsuspected host-specificity in a genus of presumed generalist tropical parasitoid tachinid flies. Insect parasitoids are a major cause of natural insect mortality and are used as biological control agents. They are thought to represent 8%-25% of all insect species, but understanding species richness and biology is hampered by the very large number of morphologically similar species. A published commentary by Herre emphasizes “…the value of DNA barcoding in uncovering hidden diversity…especially when coupled with traditional taxonomy and a keen appreciation of the fascinating details of basic natural history.”

This entry was posted on Friday, March 24th, 2006 at 1:19 pm and is filed under barcode performance, General, Papers. You can follow any responses to this entry through the RSS 2.0 feed. Both comments and pings are currently closed.

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Contact: mark.stoeckle@rockefeller.edu

About this site

This web site is an outgrowth of the Taxonomy, DNA, and Barcode of Life meeting held at Banbury Center, Cold Spring Harbor Laboratory, September 9-12, 2003. It is designed and managed by Mark Stoeckle, Perrin Meyer, and Jason Yung at the Program for the Human Environment (PHE) at The Rockefeller University.

About the Program for the Human Environment

The involvement of the Program for the Human Environment in DNA barcoding dates to Jesse Ausubel's attendance in February 2002 at a conference in Nova Scotia organized by the Canadian Center for Marine Biodiversity. At the conference, Paul Hebert presented for the first time his concept of large-scale DNA barcoding for species identification. Impressed by the potential for this technology to address difficult challenges in the Census of Marine Life, Jesse agreed with Paul on encouraging a conference to explore the contribution taxonomy and DNA could make to the Census as well as other large-scale terrestrial efforts. In his capacity as a Program Director of the Sloan Foundation, Jesse turned to the Banbury Conference Center of Cold Spring Harbor Laboratory, whose leader Jan Witkowski prepared a strong proposal to explore both the scientific reliability of barcoding and the processes that might bring it to broad application. Concurrently, PHE researcher Mark Stoeckle began to work with the Hebert lab on analytic studies of barcoding in birds. Our involvement in barcoding now takes 3 forms: assisting the organizational development of the Consortium for the Barcode of Life and the Barcode of Life Initiative; contributing to the scientific development of the field, especially by studies in birds, and contributing to public understanding of the science and technology of barcoding and its applications through improved visualization techniques and preparation of brochures and other broadly accessible means, including this website. While the Sloan Foundation continues to support CBOL through a grant to the Smithsonian Institution, it does not provide financial support for barcoding research itself or support to the PHE for its research in this field.