Rockefeller University

Program for the Human Environment

The Barcode Blog

A mostly scientific blog about short DNA sequences for species identification and discovery. I encourage your commentary. -- Mark Stoeckle

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All Birds Barcoding Initiative (ABBI) flight update

Bird barcodes fly in. So far, researchers have deposited 3308 avian COI barcodes from about 800 species, which represents 8% of world birds, to the Barcode of Life Database (BOLD) www.barcodinglife.org. Sequences from outside North America are flocking in, including a recent set from western Australian parrots, contributed by Peter Spencer, Murdoch University. Quoting P. Spencer “these species are generally high profile, expensive (some >AUD50K) and charismatic (aka people like to steal and display them!).” The barcode database may assist with wildlife forensics in preventing illegal taking and export.

Specimen locations for avian barcodes deposited in BOLD as of 12 march 2006

ABBI on tour, internationally. A 2 day meeting “Museum Collections and the Barcoding of Life” will be held at the Oslo Natural History Museum on March 20-21, 2006, and is heavily oversubscribed! ABBI-related presentations include talks by Per Ericson, Swedish Museum of Natural History; Jon Fjeldsa, Zoological Museum, Copenhagen; Arild Johnsen, Oslo Natural History Museum; and myself.

On April 7-8, 2006, a Consortium for the Barcode of Life (CBOL) meeting will be held in Capetown, South Africa. David Schindel, Executive Secretary of CBOL, will present a summary of ABBI progress and plans.

A workshop on “DNA barcoding of Palearctic bird species at Naturalis” will be held at National Museum of Natural History, Leiden, on 20-21 April 2006, organized by Per Ericson, Swedish Museum of Natural History. There may be additional space; if interested, please contact Per Ericson Per.Ericson@nrm.se

Where is that barcoder? An excellent site with remarkable photos of pelagic birds www.oceanwanderers.com/, sometimes features ID puzzles, such as this unidentified petrel that landed on a cruise ship coming into Hawaii. Despite being held and photographed, its identify remains uncertain. A single breast feather collected before releasing and we might know the answer!

This entry was posted on Wednesday, March 15th, 2006 at 8:38 pm and is filed under AllBirds, General. You can follow any responses to this entry through the RSS 2.0 feed. Both comments and pings are currently closed.

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Contact: mark.stoeckle@rockefeller.edu

About this site

This web site is an outgrowth of the Taxonomy, DNA, and Barcode of Life meeting held at Banbury Center, Cold Spring Harbor Laboratory, September 9-12, 2003. It is designed and managed by Mark Stoeckle, Perrin Meyer, and Jason Yung at the Program for the Human Environment (PHE) at The Rockefeller University.

About the Program for the Human Environment

The involvement of the Program for the Human Environment in DNA barcoding dates to Jesse Ausubel's attendance in February 2002 at a conference in Nova Scotia organized by the Canadian Center for Marine Biodiversity. At the conference, Paul Hebert presented for the first time his concept of large-scale DNA barcoding for species identification. Impressed by the potential for this technology to address difficult challenges in the Census of Marine Life, Jesse agreed with Paul on encouraging a conference to explore the contribution taxonomy and DNA could make to the Census as well as other large-scale terrestrial efforts. In his capacity as a Program Director of the Sloan Foundation, Jesse turned to the Banbury Conference Center of Cold Spring Harbor Laboratory, whose leader Jan Witkowski prepared a strong proposal to explore both the scientific reliability of barcoding and the processes that might bring it to broad application. Concurrently, PHE researcher Mark Stoeckle began to work with the Hebert lab on analytic studies of barcoding in birds. Our involvement in barcoding now takes 3 forms: assisting the organizational development of the Consortium for the Barcode of Life and the Barcode of Life Initiative; contributing to the scientific development of the field, especially by studies in birds, and contributing to public understanding of the science and technology of barcoding and its applications through improved visualization techniques and preparation of brochures and other broadly accessible means, including this website. While the Sloan Foundation continues to support CBOL through a grant to the Smithsonian Institution, it does not provide financial support for barcoding research itself or support to the PHE for its research in this field.