The Barcode Blog

A mostly scientific blog about short DNA sequences for species identification and discovery. I encourage your commentary. -- Mark Stoeckle

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Galling thrips split by mtCOI

Kladothrips maslini female, credit Laurence Mound, CSIRO, CanberraThrips are tiny (.5 to 2 mm) plant feeding insects; approximately 4500 species are known, and some are serious agricultural pests. Kladothrips is an Australian genus of at least 35 species which form galls on Acacia trees. In Biol J Linn Soc 2006 88:555 researchers from Flinders University, Australia, apply mtDNA analysis to show that two gall morpho-types of Kladothrips rugosus represent different species. 

Originally described in 1907, K. rugosus is widely distributed across south and western Australia. Two gall types were noted, but no morphologic differences could be found in the thrips themselves. McLeish, Chapman, and Mound found pairwise uncorrected mtCOI p-distances were 0.0-0.6% within gall morphotypes, and 7.4-7.8% between, similar to distances within and among other gall thrips species. The authors aver the usual taxonomic distaste for distance measures (“Distance values are not intended as a means of identifying different species here, which is a problematic approach for species depiction, but as useful descriptors of genetic variation”). I translate this as distance measures can be used help discover new species, but are verboten in official species descriptions. 

The only morphologic differences are that “abdominal segments ridged and smooth K. rugosa galls, credit Michael Schwarz Laboratory, Flinders University of South AustraliaI-III are as brown as IV-VII, the metathorax is scarcely paler than the brown mesothorax and prothorax, and the sculptured reticles on the posterior half of of tergites II-III are all small and equiangular.” Phew! Not many persons could decipher such abstruse morphologic terminology, whereas DNA-based identification promises more democratic access to species identification. The main limiting factors are technological and likely solvable: establishing reference libraries and developing inexpensive DNA analytic methods. 

The authors found a third genetic cluster in K. rugosus, but were unable to discover any morphologic characters, so did not describe this as a new species. This seems scientifically inconsistent, and the authors seem to agree: “This lack of morphologic divergence has evident problems for traditional taxonomy..we suggest that “morpho-taxonomy” is little more than an historical artifact in the methodology of species recognition, despite commonly providing the most practical methods”

I hope the large data sets emerging from the barcode initiative and other genetic surveys will enable taxonomists to develop consistent methods of species delimitation, whether in thrips or thresher sharks, and the sequences themselves or their diagnostic nucleotide characters will be routinely incorporated into species descriptions.

This entry was posted on Thursday, November 16th, 2006 at 9:03 pm and is filed under General. You can follow any responses to this entry through the RSS 2.0 feed. Both comments and pings are currently closed.

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Contact: mark.stoeckle@rockefeller.edu

About this site

This web site is an outgrowth of the Taxonomy, DNA, and Barcode of Life meeting held at Banbury Center, Cold Spring Harbor Laboratory, September 9-12, 2003. It is designed and managed by Mark Stoeckle, Perrin Meyer, and Jason Yung at the Program for the Human Environment (PHE) at The Rockefeller University.

About the Program for the Human Environment

The involvement of the Program for the Human Environment in DNA barcoding dates to Jesse Ausubel's attendance in February 2002 at a conference in Nova Scotia organized by the Canadian Center for Marine Biodiversity. At the conference, Paul Hebert presented for the first time his concept of large-scale DNA barcoding for species identification. Impressed by the potential for this technology to address difficult challenges in the Census of Marine Life, Jesse agreed with Paul on encouraging a conference to explore the contribution taxonomy and DNA could make to the Census as well as other large-scale terrestrial efforts. In his capacity as a Program Director of the Sloan Foundation, Jesse turned to the Banbury Conference Center of Cold Spring Harbor Laboratory, whose leader Jan Witkowski prepared a strong proposal to explore both the scientific reliability of barcoding and the processes that might bring it to broad application. Concurrently, PHE researcher Mark Stoeckle began to work with the Hebert lab on analytic studies of barcoding in birds. Our involvement in barcoding now takes 3 forms: assisting the organizational development of the Consortium for the Barcode of Life and the Barcode of Life Initiative; contributing to the scientific development of the field, especially by studies in birds, and contributing to public understanding of the science and technology of barcoding and its applications through improved visualization techniques and preparation of brochures and other broadly accessible means, including this website. While the Sloan Foundation continues to support CBOL through a grant to the Smithsonian Institution, it does not provide financial support for barcoding research itself or support to the PHE for its research in this field.