The Barcode Blog

A mostly scientific blog about short DNA sequences for species identification and discovery. I encourage your commentary. -- Mark Stoeckle

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Growing libraries reinforce mtDNA sequence clustering

Growing barcode libraries confirm distinct clustering of mtDNA sequences. In early surveys of mtDNA differences, it seemed possible that as larger numbers of individuals were sampled, there would invevitably be many overlaps between closely-related species. The accumulating barcode data show this supposition is incorrect. Instead, further sampling reinforces the observation that most animal species correspond to distinct mtDNA sequence clusters, as for example, in the tree of Canada and Cackling Goose mtDNA sequences below (Figure A generated with public data files and software on Barcode of Life Database site https://www.barcodinglife.org/). Where large differences within species are found, they generally reflect the distinct sequence clusters of geographically restricted populations which have other identifiable biological differences, as in tree of Winter Wren mtDNA sequences below. Such clusters are probably best regarded as separate species (Figure B adapted from Drovetski et al 2004 Proc R Soc Lond B 271:545; number individuals sequenced shown in parentheses). 

 

An emerging corollary is that most named subspecies do not represent evolutionary significant units.   Large-scale surveys are revealing many genetically distinct clusters within named species, but these clusters generally do NOT correspond to described subspecies. For example, none of the 39 subspecies of Winter wren correspond to the geographic clades reported by Drovetski et al. and grouping by subspecies did not account for any variance. Robert Zink reports that “97% of continentally distributed avian subspecies lack the population genetic structure indicative of a distinct evolutionary unit” (Zink 2004 Proc R Soc Lond B 271:564). Regarding mtDNA sequence clusters, Zink states “it is these unnamed units and not named subspecies that should play a major role in guiding conservation efforts and in identifying biological diversity” Large-scale DNA barcode surveys of multicellular animals and plants can provide a foundation for intelligent conservation efforts. 

 

This entry was posted on Thursday, September 7th, 2006 at 12:56 pm and is filed under General. You can follow any responses to this entry through the RSS 2.0 feed. Both comments and pings are currently closed.

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Contact: mark.stoeckle@rockefeller.edu

About this site

This web site is an outgrowth of the Taxonomy, DNA, and Barcode of Life meeting held at Banbury Center, Cold Spring Harbor Laboratory, September 9-12, 2003. It is designed and managed by Mark Stoeckle, Perrin Meyer, and Jason Yung at the Program for the Human Environment (PHE) at The Rockefeller University.

About the Program for the Human Environment

The involvement of the Program for the Human Environment in DNA barcoding dates to Jesse Ausubel's attendance in February 2002 at a conference in Nova Scotia organized by the Canadian Center for Marine Biodiversity. At the conference, Paul Hebert presented for the first time his concept of large-scale DNA barcoding for species identification. Impressed by the potential for this technology to address difficult challenges in the Census of Marine Life, Jesse agreed with Paul on encouraging a conference to explore the contribution taxonomy and DNA could make to the Census as well as other large-scale terrestrial efforts. In his capacity as a Program Director of the Sloan Foundation, Jesse turned to the Banbury Conference Center of Cold Spring Harbor Laboratory, whose leader Jan Witkowski prepared a strong proposal to explore both the scientific reliability of barcoding and the processes that might bring it to broad application. Concurrently, PHE researcher Mark Stoeckle began to work with the Hebert lab on analytic studies of barcoding in birds. Our involvement in barcoding now takes 3 forms: assisting the organizational development of the Consortium for the Barcode of Life and the Barcode of Life Initiative; contributing to the scientific development of the field, especially by studies in birds, and contributing to public understanding of the science and technology of barcoding and its applications through improved visualization techniques and preparation of brochures and other broadly accessible means, including this website. While the Sloan Foundation continues to support CBOL through a grant to the Smithsonian Institution, it does not provide financial support for barcoding research itself or support to the PHE for its research in this field.