Mark Stoeckle: Publications

1. Stoeckle MY, Shaw MW, and Choppin PW. (1987) Segment-specific and common nucleotide sequences in the non-coding regions of influenza B virus genome RNAs. Proc Natl Acad Sci USA, 84, 2703-2707.
2. Sugano S, Stoeckle MY, and Hanafusa H. (1987) Transformation by Rous sarcoma virus induces a novel gene with homology to a mitogenic platelet protein. Cell, 49, 321-328.
3. Stoeckle MY, Sugano S, Hampe A, Vashishtha A, Pellman D, and Hanafusa H. (1988) 78-kilodalton glucose-regulated protein is induced in Rous sarcoma virus-transformed cells independently of glucose deprivation. Mol Cell Biol 8, 2675-2680.
4. Stoeckle MY. (1989) Recent developments in retroviruses other than HIV. Current Opinion Infect Dis 2, 244-248.
5. Stoeckle MY, and Hanafusa H. (1989) Processing of 9E3 mRNA and regulation of its stability in normal and Rous-sarcoma virus-transformed cells. Mol Cell Biol 9, 4738-4745.
6. Stoeckle MY, and Barker KA. (1990) Two burgeoning families of platelet factor 4-related proteins: mediators of the inflammatory response. The New Biologist 2, 313-323.
7. Dutta A, Stoeckle MY, and Hanafusa H. (1990) Serum and v-src increase the level of CCAAT-binding factor required for transcription from a retroviral LTR. Genes Devel 4, 243-254.
8. Cohen OJ, and Stoeckle MY. (1991) Extrapulmonary Pneumocystis carinii infections in the acquired immunodeficiency syndrome. Arch Int Med, 151, 1205-1214.
9. Stoeckle MY. (1991) Post-transcriptional regulation of groa, b, g, and IL-8 mRNAs by IL-1b. Nucl Acids Res 19, 917-920.
10. Murray HW, Squires KE, Miralles CD, Stoeckle MY, Granger AM, Granelli-Piperno A, and Bogdan C. (1992) Acquired resistance and granuloma formation in experimental visceral leishmaniasis: differential T cell and lymphokine roles in initial vs. established immunity. J Immunol 148, 1858-1863.
11. Stoeckle MY. (1992) Removal of a 3' non-coding sequence is an initial step in degradation of groa mRNA and is regulated by interleukin-1. Nucl Acids Res 20: 1123-1127.
12. Stoeckle MY, and Douglas Jr RG. (1992) Infectious Diseases: Contempo 1992. J Amer Med Assoc, 268: 366-368.
13. Stoeckle MY and Guan L. (1993) High-resolution analysis of groa mRNA poly(A) shortening: regulation by IL-1. Nucleic Acids Res, 21:1613-7.
14. Stoeckle MY and Guan L. (1993) Improved resolution and sensitivity of Northern blots using polyacrylamide-urea gels. Biotechniques, 15:229-230.
15. Stoeckle MY, and Douglas Jr RG. (1993) Infectious Diseases: Contempo 1993. J Amer Med Assoc, 270:223-4.
16. Barker KA, Hampe A, Stoeckle MY, and Hanafusa H. (1993) Tranformation-associated cytokine 9E3/CEF-4 is chemotactic for chicken peripheral blood mononuclear cells. J Virol, 67:3528-33.
17. Murray HW, Miralles D, Stoeckle MY, and McDermott DF. (1993) Role and effect of interleukin-2 in experimental visceral leishmaniasis. J Immunol, 151:929-38.
18. Stoeckle MY, Guan L, Riegler N, Weitzman I, Kreiswirth B, Kornblum J, Laraque F, and Riley LW. (1993) Catalase-peroxidase gene sequences in isoniazid-sensitive and resistant strains of Mycobacterium tuberculosis from New York City. J Infect Dis, 168:1063-5.
19. Wallach FR, Forni AL, Stoeckle MY, Steinberg CR, Fisher L, Malawista SE, Murray HW. (1993) Circulating Borrellia burdorferi in patients with acute Lyme disease: results of blood cultures and serum DNA analysis. J Infect Dis, 168:1541-3.
20. Miralles GD, Stoeckle MY, McDermott DF, Finkelman FD, and Murray HW. (1994) Th1 and Th2 Cell-associated cytokines in experimental visceral leishmaniasis. Infect Immun 62:1058-1063.
21. Stoeckle MY, and Douglas Jr RG. (1994) Infectious Diseases: Contempo 1994. J Amer Med Assoc, 271:1677-1679.
22. Friedman CR, Stoeckle MY, Kreiswirth BN, Johnson WD Jr, Manoach SM, Sathianathan K, Riley LW. (1995) Transmission of multi-drug resistant tuberculosis in a large urban setting. Amer J Resp Critical Care Med, 152: 355-359.
23. Murray HW, Cervia JS, Hariprashad J, Taylor AP, Stoeckle MY, Hochman H. (1995) Effect of granulocyte-macrophage colony-stimulating factor in experimental visceral leishmaniasis. J Clin Inves, 95:1183-1192.
24. Stoeckle MY, and Douglas Jr RG. (1995) Infectious Diseases: Contempo 1995. J Amer Med Assoc, 273: 1686-1688.
25. Friedman CR, Stoeckle MY, Johnson WD Jr, and Riley LW. (1995) Double repetitive element PCR method for subtyping Mycobacterium tuberculosis clinical isolates. J Clin Micro, 33:1383-1384.
26. Sepkowitz KA, Friedman CR, Hafner A, Kwok D, Manoach S, Floris M, Martinez D, Sathianathan K, Brown E, Berger JJ, Segal-Maurer S, Kreiswirth B, Stoeckle MY, and Riley LW. (1995) Tuberculosis among urban health care workers: a study using restriction fragment length polymorphism typing. Clin Infect Dis, 21:1098-1011.
27. Mannheimer SB, Hariprashad J, Stoeckle MY, and Murray HW. (1996) Induction of macrophage antiprotozoal activity by monocyte chemotactic and activating factor. FEMS Immunology and Medical Microb, 14: 59-61.
28. Stoeckle MY and Douglas RG Jr. (1996) Infectious Diseases: Contempo 1996. J Amer Med Assoc, 275:1816-1817.
29. Murray HW, Hariprashad J, McDermott DF, and Stoeckle MY. (1996) Multiple host defense defects in failure of C57BL/6 ep/ep (Pale Ear) mice to resolve visceral Leishmania donovani infection. Infection Immun, 64: 161-166.
30. Stoeckle MY, Falck-Pederson E, Rubin BY, Anderson SL, and Murray HW. (1996) Delivery of human interferon-γ via gene transfer in vitro: prolonged expression and induction of macrophage antimicrobial activity. J Interferon Cytokine Res, 16: 1015-1019.
31. Martins-Green M, Stoeckle M, Hampe A, Wimberly S, and Hanafusa H. (1996) The 9E3/CEF4 cytokine: kinetics of secretion, and processing by plasmin, and interaction with extracellular matrix. Cytokine, 8:448-459.
32. Mannheimer SB, Sepkowitz KA, Stoeckle M, Friedman CR, Hafner A, and Riley LW. (1997) Risk factors and outcome of human immunodeficiency virus-infected patients with sporadic multidrug-resistant tuberculosis in New York City. Int J Tuiberc Lung Dis, Aug 1: 319-325.
33. Stoeckle M. (2003) Taxonomy, DNA, and the bar code of Life. BioScience 53: 796-797.
34. Hebert PDN, Stoeckle MY, Zemlak TS, Francis CM. (2004) Identification of birds through DNA barcodes. PLoS Biol 2; 1657-1663.
35. Kerr KCR, Stoeckle MY, Dove CJ, Weigt LA, Francis CM, Hebert PDN. (2007) Comprehensive DNA barcode coverage of North American birds. Mol Ecol Notes 7:535-543.
36. Sodhi NS, Astuti D, Diesmos AC, Ericson P, Fernandopulle N, Kotagama S, Kudavidanege E, Lim HC, Lee B, Lim SLH, Lin Y, Lohman DJ, Meckvichai W, Miranda H, Moyle RG, Ong P, Pan KA, Prawiradilaga D, Rahman MA, Rahmani A, Sheldon FH, Stoeckle MY, Sulandari S, Wang LK, Winker K. (2007) Barcoding Indo-Malayan birds. Raffles Bull Zool 55:397-398.
37. Stoeckle MY, Hebert PDN. (2008) Barcode of Life. Sci Amer 299:82-88.
38. Stoeckle M, Winker K. 2009. A global snapshot of avian tissue collections: state of the enterprise. Auk 126, 684-687
39. Sirovich L, Stoeckle MY, Zhang Y (2009) A scalable method for analysis and display of DNA sequences. PLoS ONE 4:e7051.
40. Johnsen A, Rindal E, Ericson PGP, Zuccon D, Kerr KCR, Stoeckle MY, Lifjeld (2010) DNA barcoding of Scandanavian birds reveals divergent lineages in trans-Atlantic species. J Ornithol 151: Online First
41. Raupach MJ, Astrin JJ, Hannig K, Peters MK, Stoeckle MY, Wagele J-W (2010) Molecular identification of Central European ground beetles (Coleoptera: Carabidae) using nuclear rDNA expansion segments and DNA barcodes. Front Zool 7:26.
42. Stoeckle, MY, Gamble CC, Kirpekar R, Young G, Ahmed S, Little DP (2011) Commercial Teas Highlight Plant DNA Barcode Identification Successes and Obstacles. Nature Scientific Reports 1:42.
43. Schindel DE, Stoeckle MY, Milensky CM, Trizna , Schmidt BK, Gebhard CA, Graves GR. (2011) Project Description: DNA Barcodes of Bird Species in the National Museum of Natural History, Smithsonian Institution, USA. ZooKeys 152:87-91.
44. DA Lijtmaer, KCR Kerr, MY. Stoeckle, and PL Tubaro. DNA Barcoding Birds: From Field Collection to Data Analysis. Chapter 7 in DNA Barcodes: Methods and Protocols 127-152, 2012.