The Barcode Blog

A mostly scientific blog about short DNA sequences for species identification and discovery. I encourage your commentary. -- Mark Stoeckle

Subscribe to this blog

Sign up for email notifications

DNA helps identify African agricultural pests

Among the 35,000 known species of noctuid moths, a number are destructive agricultural pests, including for example Corn earworm Helicoverpa zea and Tobacco budworm Heliothis virescens. Accurate identification is the essential first step in pest management, but morphologic identification can be difficult, particularly of eggs and larval forms.

In September 2007 African Entomology, researchers from South Africa, Australia, and France analyze COI mtDNA of Busseola sp. larva in Ethiopian sugarcane. The DNA barcode region of COI was amplified from 7 morphologically-indistinguishable larval specimens using standard invertebrate primers (Folmer et al, Mol Marine Biol Biotech 3:294, 1994). Rearing of the larva was attempted, but none of the collected larva developed to the adult stage. Sequence analysis revealed two distinct clusters that matched sequences derived from adult B. fusca and B. phaia. Assefa and co-authors conclude “DNA-based methods were found to be a quick, easy and reliable method for identification of species…[and] may then be solutions for conditions in Africa where there is an acute shortage of experts and rearing facilities to keep field-collected insects alive until emergence of adults for morphological identification.”

This entry was posted on Sunday, November 25th, 2007 at 7:59 pm and is filed under General. You can follow any responses to this entry through the RSS 2.0 feed. Both comments and pings are currently closed.

Comments are closed.

Contact: mark.stoeckle@rockefeller.edu

About this site

This web site is an outgrowth of the Taxonomy, DNA, and Barcode of Life meeting held at Banbury Center, Cold Spring Harbor Laboratory, September 9-12, 2003. It is designed and managed by Mark Stoeckle, Perrin Meyer, and Jason Yung at the Program for the Human Environment (PHE) at The Rockefeller University.

About the Program for the Human Environment

The involvement of the Program for the Human Environment in DNA barcoding dates to Jesse Ausubel's attendance in February 2002 at a conference in Nova Scotia organized by the Canadian Center for Marine Biodiversity. At the conference, Paul Hebert presented for the first time his concept of large-scale DNA barcoding for species identification. Impressed by the potential for this technology to address difficult challenges in the Census of Marine Life, Jesse agreed with Paul on encouraging a conference to explore the contribution taxonomy and DNA could make to the Census as well as other large-scale terrestrial efforts. In his capacity as a Program Director of the Sloan Foundation, Jesse turned to the Banbury Conference Center of Cold Spring Harbor Laboratory, whose leader Jan Witkowski prepared a strong proposal to explore both the scientific reliability of barcoding and the processes that might bring it to broad application. Concurrently, PHE researcher Mark Stoeckle began to work with the Hebert lab on analytic studies of barcoding in birds. Our involvement in barcoding now takes 3 forms: assisting the organizational development of the Consortium for the Barcode of Life and the Barcode of Life Initiative; contributing to the scientific development of the field, especially by studies in birds, and contributing to public understanding of the science and technology of barcoding and its applications through improved visualization techniques and preparation of brochures and other broadly accessible means, including this website. While the Sloan Foundation continues to support CBOL through a grant to the Smithsonian Institution, it does not provide financial support for barcoding research itself or support to the PHE for its research in this field.