The Barcode Blog

A mostly scientific blog about short DNA sequences for species identification and discovery. I encourage your commentary. -- Mark Stoeckle

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“Why every protist needs a barcode”

In February 2007 Microbiology Today, scientists report on the Barcoding Protists Workshop held in Portland, Maine in November 2006, which was attended by 40 protist experts from 12 countries (Australia, Canada, Denmark, France, Germany, Japan, Malaysia, Netherlands, Norway, Russia, UK, and USA). The workshop was co-sponsored by the US National Center for Culture of Marine Phytoplankton and the UK NERC Culture Collection of Algae and Protozoa.

According to Williamson et al, “most original descriptions for [over 200,000 named] protist species are based on light microscopy and ink drawings, not only making species identification for some groups an inherently subjective and specialist occupation, but also potentially hiding major genetic diversity.”

 

 

Workshop participants agreed unanimously that “to help resolve many of the contradictions and uncertainties in protist taxonomy, genetic barcoding is the way forward, starting with material, particularly type strains, in internationally recognized culture collections.”

 

This entry was posted on Tuesday, February 13th, 2007 at 11:03 pm and is filed under General. You can follow any responses to this entry through the RSS 2.0 feed. Both comments and pings are currently closed.

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Contact: mark.stoeckle@rockefeller.edu

About this site

This web site is an outgrowth of the Taxonomy, DNA, and Barcode of Life meeting held at Banbury Center, Cold Spring Harbor Laboratory, September 9-12, 2003. It is designed and managed by Mark Stoeckle, Perrin Meyer, and Jason Yung at the Program for the Human Environment (PHE) at The Rockefeller University.

About the Program for the Human Environment

The involvement of the Program for the Human Environment in DNA barcoding dates to Jesse Ausubel's attendance in February 2002 at a conference in Nova Scotia organized by the Canadian Center for Marine Biodiversity. At the conference, Paul Hebert presented for the first time his concept of large-scale DNA barcoding for species identification. Impressed by the potential for this technology to address difficult challenges in the Census of Marine Life, Jesse agreed with Paul on encouraging a conference to explore the contribution taxonomy and DNA could make to the Census as well as other large-scale terrestrial efforts. In his capacity as a Program Director of the Sloan Foundation, Jesse turned to the Banbury Conference Center of Cold Spring Harbor Laboratory, whose leader Jan Witkowski prepared a strong proposal to explore both the scientific reliability of barcoding and the processes that might bring it to broad application. Concurrently, PHE researcher Mark Stoeckle began to work with the Hebert lab on analytic studies of barcoding in birds. Our involvement in barcoding now takes 3 forms: assisting the organizational development of the Consortium for the Barcode of Life and the Barcode of Life Initiative; contributing to the scientific development of the field, especially by studies in birds, and contributing to public understanding of the science and technology of barcoding and its applications through improved visualization techniques and preparation of brochures and other broadly accessible means, including this website. While the Sloan Foundation continues to support CBOL through a grant to the Smithsonian Institution, it does not provide financial support for barcoding research itself or support to the PHE for its research in this field.